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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52686712_52688366_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52686712 - 52688366
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
GTATTGTTAAAT
Flanking Amino Acid:
MQSSIKQLETRLRVTVQDAE
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.7
35.1
Major BPS
78.3
0.7
1
80
32.1
Major PPT
72.7
0.51
0.9
69.5
36.5
Minor 5ss
31.9
-2.1
3.1
40.7
45.3
Minor BPS
53.9
0.2
2.1
74.63
41.7

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588