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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52688459_52688631_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52688459 - 52688631
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTAG
5'SS Class:
major
3'SS Sequence:
TTATTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTC
Flanking Amino Acid:
EKLQGQLERKEEDVLSAQQR
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.4
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.8
77.8
36.3
Minor 5ss
49.4
-0
2.5
64.1
47.4
Minor BPS
50.9
0.01
1.7
62.44
37.1

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588