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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52688723_52692917_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52688723 - 52692917
Intron Length:
4195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTATAC
Flanking Amino Acid:
VELEQLRKQLRQAKIDGRTA
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
67.1
32.5
Major BPS
80
0.75
1
78.6
31
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
43.7
-0.7
3
58.5
46.3
Minor BPS
67.8
0.54
1.7
79.48
35.7

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588
ENSAPLT00000029968
52661684 - 52700883
39200