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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52694944_52695420_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52694944 - 52695420
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATGGTAAACA
Flanking Amino Acid:
IHVAERQKQKDQLTSFHQLT
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
77.9
30.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
87.9
0.85
0.6
87.9
22.2
Minor 5ss
46.5
-0.4
2.7
62
36.6
Minor BPS
43.9
-0.4
2.6
60.61
45.2

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588
ENSAPLT00000029968
52661684 - 52700883
39200