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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52695544_52696371_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52695544 - 52696371
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTGTGAG
5'SS Class:
major
3'SS Sequence:
TGCAACTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTCTGCAACT
Flanking Amino Acid:
LQEQLQLTNQEKEHAIELWQ
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.8
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.3
0.34
0.9
61.9
39.5
Minor 5ss
34.4
-1.8
3.1
39.3
40.9
Minor BPS
55.5
0.25
2.2
80.88
40.9

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029968
52661684 - 52700883
39200
ENSAPLT00000017888
52661552 - 52702271
40720
ENSAPLT00000015418
52661684 - 52702271
40588