Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52698107_52699013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52698107 - 52699013

Intron Length:

907

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCAATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

GTTTTTCCAATT

Flanking Amino Acid:

GISGSRIKDQSLSALIVEYD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

1.1

81.4

32.7

Major BPS

73.5

0.59

81.3

29.9

Major PPT

80.6

0.69

0.8

77.2

35.6

Minor 5ss

39.9

-1.1

3.3

57.8

46.8

Minor BPS

49.9

0.08

1.8

73.14

38.1

Associated Gene:

Gene:

SCLT1

Ensembl Gene ID:

ENSAPLG00000014774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029968

52661684 - 52700883

39200

ENSAPLT00000017888

52661552 - 52702271

40720

ENSAPLT00000015418

52661684 - 52702271

40588