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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52700706_52702237_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52700706 - 52702237
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATCCCCTTTATA
Flanking Amino Acid:
AAELGGGGEPDSCSILEPQK
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.2
0.88
0.6
86
21
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
59.5
0.29
1.6
67
39.1

Associated Gene:

Gene:
SCLT1
Ensembl Gene ID:
ENSAPLG00000014774
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015418
52661684 - 52702271
40588