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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52707227_52708641_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52707227 - 52708641
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
CCTTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
CCTTTCTCTACA
Flanking Amino Acid:
CELQEGQKPDFHRLEFFKEL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75.5
33.6
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
85.5
0.8
0.7
79.8
25.8
Minor 5ss
39.6
-1.2
3.1
55.5
42.8
Minor BPS
50
-0
1.9
62.69
43.6

Associated Gene:

Gene:
C4orf33
Ensembl Gene ID:
ENSAPLG00000014754
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015371
52702292 - 52708741
6450