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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52763654_52764319_F

Intron Information:

Intron Rank:
144690
Intron Class:
major
Intron Phase:
Intron Coordinates:
52763654 - 52764319
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AGTGCCTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
83.3
0.75
0.8
80.9
35.8
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
66.5
0.5
1.5
71.17
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026283
52763618 - 52767892
4275