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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52783464_52783978_R

Intron Information:

Intron Rank:
153524
Intron Class:
major
Intron Phase:
Intron Coordinates:
52783464 - 52783978
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATGTTTAGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
70
0.5
1
67
39.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
44.9
-0.3
1.9
63.36
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030074
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033529
52783248 - 52785602
2355