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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52784041_52784956_R

Intron Information:

Intron Rank:
153525
Intron Class:
major
Intron Phase:
Intron Coordinates:
52784041 - 52784956
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TATATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTGTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.3
0.8
0.8
77.3
41.4
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
54
0.12
2.2
74.26
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030074
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033529
52783248 - 52785602
2355