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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52795271_52907487_F

Intron Information:

Intron Rank:
130409
Intron Class:
major
Intron Phase:
Intron Coordinates:
52795271 - 52907487
Intron Length:
112217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTATACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
45.4
-0.2
2
67.58
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028704
52795074 - 52950730
155657