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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52896626_52907487_F

Intron Information:

Intron Rank:
130414
Intron Class:
major
Intron Phase:
Intron Coordinates:
52896626 - 52907487
Intron Length:
10862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCCTA
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTATACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.2
70.1
42
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
37.8
-1.4
3
48.3
47.3
Minor BPS
45.4
-0.2
2
67.58
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044958
52896543 - 52950730
54188
ENSAPLT00000038880
52844384 - 53005036
160653