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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52907544_52930817_F

Intron Information:

Intron Rank:
130410
Intron Class:
major
Intron Phase:
Intron Coordinates:
52907544 - 52930817
Intron Length:
23274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCTCTCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
79.7
0.67
0.7
73.5
24.7
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
68.4
0.57
1.4
73.75
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044958
52896543 - 52950730
54188
ENSAPLT00000038880
52844384 - 53005036
160653
ENSAPLT00000028704
52795074 - 52950730
155657