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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52930938_53004623_F

Intron Information:

Intron Rank:
130416
Intron Class:
major
Intron Phase:
Intron Coordinates:
52930938 - 53004623
Intron Length:
73686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATCATCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71
0.47
0.9
63.5
37.4
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038880
52844384 - 53005036
160653