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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5295645_5301211_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5295645 - 5301211
Intron Length:
5567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTTTCCGTAACC
Flanking Amino Acid:
MDGKLGQPGPQGPPG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
70
0.61
2
82.21
38.6

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064