Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53007357_53027825_F

Intron Information:

Intron Rank:

130252

Intron Class:

major

Intron Phase:

Intron Coordinates:

53007357 - 53027825

Intron Length:

20469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

TCTCTCATATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.9

87.1

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

38.9

-1.3

2.8

43.1

43.9

Minor BPS

51.2

0.12

1.9

73.91

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027917

53007218 - 53030220

23003