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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53033623_53037261_R

Intron Information:

Intron Rank:
136120
Intron Class:
major
Intron Phase:
Intron Coordinates:
53033623 - 53037261
Intron Length:
3639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
TATTCCTGAGAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
77.5
0.62
0.9
68.9
41.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
57.1
0.22
1.8
71.54
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020649
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041540
53033228 - 53041410
8183
ENSAPLT00000039135
53033228 - 53037470
4243