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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53075533_53105741_F

Intron Information:

Intron Rank:
148637
Intron Class:
major
Intron Phase:
Intron Coordinates:
53075533 - 53105741
Intron Length:
30209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TATTACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GGAGCCATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
79
0.65
0.9
75.1
39
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
53
0.17
1.7
67.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030028
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048041
53074580 - 53148439
73860