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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53083531_53092015_R

Intron Information:

Intron Rank:
154200
Intron Class:
major
Intron Phase:
Intron Coordinates:
53083531 - 53092015
Intron Length:
8485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTGCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.2
0.7
0.8
75.6
33
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
58.4
0.26
2.2
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042892
53083087 - 53104460
21374