Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53180964_53206769_F

Intron Information:

Intron Rank:

147123

Intron Class:

major

Intron Phase:

Intron Coordinates:

53180964 - 53206769

Intron Length:

25806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGATCA

5'SS Class:

major

3'SS Sequence:

TCTCTCTGTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

ATACAATGAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

0.9

69.2

30.9

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

80.5

0.69

0.9

75.6

32.9

Minor 5ss

32.9

-1.9

36.6

41.5

Minor BPS

46.3

-0.2

1.8

64.76

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028764

53180449 - 53213123

32675