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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53199286_53202363_F

Intron Information:

Intron Rank:
147129
Intron Class:
major
Intron Phase:
Intron Coordinates:
53199286 - 53202363
Intron Length:
3078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTATGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
43.5
-0.4
2.2
63.11
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029240
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045354
53197495 - 53212518
15024