About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53412936_53428253_R

Intron Information:

Intron Rank:
129728
Intron Class:
major
Intron Phase:
Intron Coordinates:
53412936 - 53428253
Intron Length:
15318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTATTTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
76.9
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
30.1
-2.3
3.1
38.6
46.4
Minor BPS
49.8
-0.1
1.6
55.28
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016977
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021863
53409832 - 53428320
18489