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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53435583_53435715_F

Intron Information:

Intron Rank:
132530
Intron Class:
major
Intron Phase:
Intron Coordinates:
53435583 - 53435715
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCTA
5'SS Class:
strong_major
3'SS Sequence:
GACAACTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATATCTATCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
63.6
0.31
1
53.9
40.8
Minor 5ss
40.8
-1
3.2
56.1
48
Minor BPS
50.1
-0
2
67.54
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021215
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034971
53409832 - 53436625
26794