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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53527090_53535094_F

Intron Information:

Intron Rank:
127450
Intron Class:
major
Intron Phase:
Intron Coordinates:
53527090 - 53535094
Intron Length:
8005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
78.2
37.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
38.1
-1.3
3
56
41.5
Minor BPS
62.1
0.36
1.8
72.98
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040908
53523593 - 53573654
50062