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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53535126_53573631_F

Intron Information:

Intron Rank:
127451
Intron Class:
major
Intron Phase:
Intron Coordinates:
53535126 - 53573631
Intron Length:
38506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTATTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
58.5
0.35
1.8
78.29
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040908
53523593 - 53573654
50062