Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53598969_53602257_F

Intron Information:

Intron Rank:

141364

Intron Class:

major

Intron Phase:

Intron Coordinates:

53598969 - 53602257

Intron Length:

3289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGAAG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTTCTGTAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.1

42.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

29.9

-2.3

3.3

38.8

46.5

Minor BPS

-0

2.3

72.32

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020830

53597827 - 53602519

4693

ENSAPLT00000017960

53596649 - 53602519

5871