Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53598969_53606909_F

Intron Information:

Intron Rank:

141368

Intron Class:

major

Intron Phase:

Intron Coordinates:

53598969 - 53606909

Intron Length:

7941

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGAAG

5'SS Class:

major

3'SS Sequence:

TTTTCAGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

AGTGATTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.1

42.9

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

83.4

0.75

0.9

77.6

35.6

Minor 5ss

29.9

-2.3

3.3

38.8

46.5

Minor BPS

61.9

0.45

1.6

76.07

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034947

53596649 - 53606982

10334