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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53746465_53752668_R

Intron Information:

Intron Rank:
149691
Intron Class:
major
Intron Phase:
Intron Coordinates:
53746465 - 53752668
Intron Length:
6204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.4
37.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.2
0.77
0.8
77.3
35.6
Minor 5ss
30.9
-2.2
3
42
44.5
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028070
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037783
53746273 - 53754963
8691