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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53780966_53793481_R

Intron Information:

Intron Rank:
153010
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
53780966 - 53793481
Intron Length:
12516

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
CCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTGTTTAATGCAC|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTGTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
43.6
-0.3
3.2
67.2
42.9
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
61.6
0.23
1.8
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042356
53780824 - 53905293
124470
ENSAPLT00000017556
53780824 - 53905293
124470