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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53793601_53821972_R

Intron Information:

Intron Rank:
153011
Intron Class:
major
Intron Phase:
Intron Coordinates:
53793601 - 53821972
Intron Length:
28372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
82.3
34.3
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
49.8
0.06
1.7
69.01
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034181
53789472 - 53905293
115822
ENSAPLT00000017556
53780824 - 53905293
124470