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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53793601_53905407_R

Intron Information:

Intron Rank:
153015
Intron Class:
major
Intron Phase:
Intron Coordinates:
53793601 - 53905407
Intron Length:
111807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTATATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
80
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
82.3
34.3
Minor 5ss
41.2
-1
3.4
64.1
41.5
Minor BPS
49.8
0.06
1.7
69.01
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029020
53789472 - 53905443
115972