Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53822068_53822827_R

Intron Information:

Intron Rank:

153012

Intron Class:

major

Intron Phase:

Intron Coordinates:

53822068 - 53822827

Intron Length:

760

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTTAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TGTTTCTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

72.8

0.57

30.3

Major PPT

69.8

0.45

1.1

72.1

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

76.3

0.82

1.3

81.32

33.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029912

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017556

53780824 - 53905293

124470

ENSAPLT00000034181

53789472 - 53905293

115822