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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53886983_53905219_R

Intron Information:

Intron Rank:
153024
Intron Class:
major
Intron Phase:
Intron Coordinates:
53886983 - 53905219
Intron Length:
18237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
AATGTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
67.1
0.62
1.4
77.68
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042356
53780824 - 53905293
124470