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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_53968305_53974773_R

Intron Information:

Intron Rank:
151436
Intron Class:
major
Intron Phase:
Intron Coordinates:
53968305 - 53974773
Intron Length:
6469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
88.1
0.86
0.6
87.5
22.8
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029033
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040022
53955880 - 53975009
19130