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Intron Name: Anas_platyrhynchos_platyrhynchos_4_54056641_54057918_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54056641 - 54057918

Intron Length:

1278

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TATTTCCTAATA

Flanking Amino Acid:

ISNGSILSSETKHQRAELSY

Intron Amino Acid Position:

869

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

81.9

0.79

0.9

80.1

Major PPT

85.5

0.8

0.6

80.4

31.6

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

66.8

0.52

1.6

76.98

33.6

Associated Gene:

Gene:

PCDH10

Ensembl Gene ID:

ENSAPLG00000020479

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038151

54054037 - 54084010

29974

ENSAPLT00000029418

54054037 - 54067470

13434