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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54135159_54160306_F

Intron Information:

Intron Rank:
133399
Intron Class:
major
Intron Phase:
Intron Coordinates:
54135159 - 54160306
Intron Length:
25148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.5
0.64
0.8
70.7
40.4
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021752
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021791
54134806 - 54264381
129576