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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54162608_54248113_F

Intron Information:

Intron Rank:
133401
Intron Class:
major
Intron Phase:
Intron Coordinates:
54162608 - 54248113
Intron Length:
85506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACCATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTCCCCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
62
0.27
1
55.4
39.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
57.8
0.32
2
77.16
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021752
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021791
54134806 - 54264381
129576