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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54350194_54350297_F

Intron Information:

Intron Rank:
146122
Intron Class:
major
Intron Phase:
Intron Coordinates:
54350194 - 54350297
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTTTGTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
44
-0.3
2.4
67.28
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017568
54350044 - 54359281
9238