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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54350433_54358776_F

Intron Information:

Intron Rank:
146123
Intron Class:
major
Intron Phase:
Intron Coordinates:
54350433 - 54358776
Intron Length:
8344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGCTT
5'SS Class:
major
3'SS Sequence:
TCTTCTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.1
44
Major BPS
72.8
0.57
1
81
30.3
Major PPT
82.2
0.72
0.7
77.9
29.2
Minor 5ss
38
-1.4
3.5
53.1
44.8
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032311
54350044 - 54359281
9238
ENSAPLT00000017568
54350044 - 54359281
9238