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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54432639_54451125_F

Intron Information:

Intron Rank:
146125
Intron Class:
major
Intron Phase:
Intron Coordinates:
54432639 - 54451125
Intron Length:
18487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.7
0.62
1
73.6
41.7
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024861
54432327 - 54483352
51026