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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54451209_54473786_F

Intron Information:

Intron Rank:
146126
Intron Class:
major
Intron Phase:
Intron Coordinates:
54451209 - 54473786
Intron Length:
22578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
ACCTCATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
82.9
0.74
0.8
73.9
36.2
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
50.3
0.09
1.9
66.91
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028717
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024861
54432327 - 54483352
51026