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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54507221_54507337_F

Intron Information:

Intron Rank:
133351
Intron Class:
major
Intron Phase:
Intron Coordinates:
54507221 - 54507337
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
69.9
0.45
1
61.9
43.3
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
69.1
0.58
1.9
82.19
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021704
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032593
54507057 - 54540385
33329