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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54534556_54535374_F

Intron Information:

Intron Rank:
133350
Intron Class:
major
Intron Phase:
Intron Coordinates:
54534556 - 54535374
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATGTGCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATGACTTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
77.8
0.62
0.9
73.9
41.1
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
49.8
0.07
1.8
67.83
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021704
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020065
54534103 - 54535453
1351