About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54534556_54539942_F

Intron Information:

Intron Rank:
133353
Intron Class:
major
Intron Phase:
Intron Coordinates:
54534556 - 54539942
Intron Length:
5387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AAAACATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79
0.65
1
73.7
40.9
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
49.1
0.01
1.9
67.09
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021704
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032593
54507057 - 54540385
33329