Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54601700_54602145_F

Intron Information:

Intron Rank:

136464

Intron Class:

major

Intron Phase:

Intron Coordinates:

54601700 - 54602145

Intron Length:

446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

GCAAAATTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

71.2

34.6

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

60.2

0.23

54.5

44.3

Minor 5ss

24.3

-3

3.1

28.4

43.8

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048236

54589758 - 54604285

14528