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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54632988_54635348_F

Intron Information:

Intron Rank:
131798
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
54632988 - 54635348
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAACAACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCCTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
52.8
0.07
1.2
51.5
41
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
56.2
0.19
1.7
68.77
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020744
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023290
54632315 - 54635807
3493