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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54635464_54639930_F

Intron Information:

Intron Rank:
131792
Intron Class:
major
Intron Phase:
Intron Coordinates:
54635464 - 54639930
Intron Length:
4467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TTTGCCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
81.8
0.71
0.8
76.8
31.7
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
67.8
0.54
1.7
77.93
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020744
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020252
54635349 - 54658144
22796
ENSAPLT00000041029
54634928 - 54655314
20387
ENSAPLT00000022448
54634928 - 54657740
22813