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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54640037_54657708_F

Intron Information:

Intron Rank:
131796
Intron Class:
major
Intron Phase:
Intron Coordinates:
54640037 - 54657708
Intron Length:
17672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.7
0.49
0.9
65.7
34.8
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020744
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022448
54634928 - 54657740
22813