Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_54662738_54672666_F

Intron Information:

Intron Rank:

145078

Intron Class:

major

Intron Phase:

Intron Coordinates:

54662738 - 54672666

Intron Length:

9929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

CTGTCTTTACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

CTGTCTTTACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

63.5

42.3

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

76.2

0.59

0.9

69.9

40.2

Minor 5ss

32.3

-2

2.7

39.4

40.3

Minor BPS

63.6

0.42

1.7

70.38

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020415

54662573 - 54672714

10142